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These zucchini pizza boats give you everything you love about pizza night without picking up the phone for takeout. Melty mozzarella, savory pizza sauce, and little rounds of pepperoni all piled into tender zucchini.

Pizza zucchini boats topped with melted cheese, mini pepperoni, and fresh basil on a baking sheet.
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I make these every summer when zucchini starts showing up everywhere. They have all the things my family loves about pizza, the melty cheese, the sauce, the pepperoni, but the zucchini stands in for the crust, so they come out lighter and lower in carbs than a regular slice. Nobody walks away from the table feeling weighed down. They have become one of my go-to weeknight dinners when I want pizza flavors without the heavy dough.

Here is what makes my version work. The biggest thing I learned through testing is how to handle the zucchini before the toppings ever go on. A short 5-minute prebake softens it enough while it still holds its shape, and blotting it dry before and after pulls out the water that would otherwise leave you with watery, soggy boats. I also season the zucchini itself before it bakes, so every bite tastes like pizza instead of plain squash with toppings on top.

These surprise people. Even family members who would never reach for zucchini are happy to eat them, because they really do taste like pizza. If you love a lighter pizza night, my Crustless Pizza and Cauliflower Pizza Crust are two more I keep in the rotation.

Tested & Perfected. I went back into the kitchen and retested this one to get the zucchini exactly right. I shortened the prebake, added a blotting step, seasoned the zucchini itself, and even tested large against medium zucchini side by side so the boats hold their shape and never turn watery.

Key Ingredients

Pizza zucchini boats ingredients.
  • Zucchini. You want 4 large zucchini that are close to the same size so they cook evenly. The zucchini is your crust here, so picking firm, even ones makes a real difference in how they hold up. I tested large against medium side by side, and large is what I reach for. The big ones give you a bigger portion and they held up just as well, with no real difference in how they cooked or tasted.
  • Pizza sauce. I use ¾ cup so every boat gets enough sauce. When I first tested this, the smaller amount left some boats dry, so I bumped it up. Spread it right down the center channel where you scooped.
  • Freshly shredded mozzarella. Shred it yourself if you can. Pre-shredded cheese is coated with cellulose that can taste a little powdery and never melts as well. Freshly shredded mozzarella melts into that stretchy, bubbly pizza top you want.
  • Mini pepperoni. These are the easy classic topping and they tuck right into the cheese. If you cannot find the mini slices, cut full-size pepperoni into quarters and you are good to go.
  • Italian seasoning. This is the step a lot of recipes skip. I sprinkle it right on the zucchini before it bakes, along with salt and pepper, so the flavor is built into the boat and not only in the toppings.
  • Parmesan and fresh basil. Both are optional garnishes at the end. A little parmesan adds extra savory flavor and the basil gives a fresh pop right before serving.
A spatula lifting a pizza zucchini boat with melted cheese stretching from the pan, topped with mini pepperoni and basil.

How to Make Zucchini Pizza Boats

Step 1: Heat the oven. Preheat the oven to 425°F. Line a baking sheet with parchment paper and set it aside.
Step 2: Slice and scoop. Slice each zucchini in half lengthwise but leave the tops on. Use a spoon or a melon baller to scoop out the insides, being careful not to pierce through. Set the halves cut side up on the baking sheet and blot the insides with a paper towel.Hands scooping the centers from halved zucchini to create zucchini boats on a cutting board.
Step 3: Brush with oil. Use a pastry brush to coat each zucchini half with the extra virgin olive oil. This helps it roast instead of dry out.Hand brushing oil onto hollowed zucchini halves arranged on a parchment-lined baking sheet, preparing them for zucchini pizza boats.

Step 4: Season and prebake. Sprinkle each half with Italian seasoning, kosher salt, and cracked black pepper. Bake for 5 minutes, then take them out and pat them dry again with a paper towel. That short bake plus the blotting is what keeps them from going watery.Hollowed zucchini halves arranged on a parchment-lined baking sheet, brushed with oil and seasoned with herbs and black pepper before baking.

Step 5: Add the sauce. Spread about 1½ tablespoons of pizza sauce down the center of each zucchini.
Step 6: Add the cheese. Sprinkle ¼ cup of freshly shredded mozzarella over the sauce on each half.
Step 7: Add the pepperoni. Arrange 14 to 16 mini pepperoni slices over the cheese.Zucchini pizza boats lined up on a baking sheet, showing different stages of assembly with pizza sauce, shredded mozzarella, and mini pepperoni slices.

Step 8: Top and bake. Bake for 7 to 10 minutes until the cheese is melted, then turn on the broiler and broil for another 2 to 3 minutes until the cheese is slightly charred. Watch them closely under the broiler because they brown fast. Let them rest a few minutes before serving.Baked zucchini pizza boats topped with melted mozzarella and crispy mini pepperoni slices, arranged on a parchment-lined baking sheet.

Step 8: Garnish. Finish with chopped fresh basil and a sprinkle of parmesan.

My Tips for the Best Zucchini Pizza Boats

Keep the prebake short. I tested a full 10-minute prebake and the zucchini turned out mushy after it was filled, baked again, and broiled. Five minutes softens it enough while it still holds its shape.

Blot before and after. Zucchini lets go of a lot of water as it bakes. I pat it dry before the prebake and again right after, and that one extra step is the difference between a sturdy boat and a watery one. The bit of liquid you might see when you lift them is mostly pepperoni grease and oil, not the zucchini, so blotting both handles it.

Season the zucchini itself. Do not rely on the toppings for all the flavor. Salt, pepper, and Italian seasoning right on the zucchini make every bite taste like pizza.

Blot the pepperoni. Pepperoni is greasy, and that grease is a lot of what pools on top. I lay the slices on a paper towel before they go on so the boats do not turn oily.

Use the broiler. Baking alone melts the cheese, but a couple of minutes under the broiler gives you those browned, bubbly spots that make it feel like a slice straight from a pizzeria. Stay close, because it goes from golden to too dark quickly.

Cut even halves. Slice your zucchini into halves of similar size and thickness so they all finish cooking at the same time.

Pizza zucchini boats with melted cheese, mini pepperoni, and basil on a white platter with a side of marinara sauce.

Topping Ideas and Variations

Switch up the toppings. Use any of your favorite pizza toppings in place of the pepperoni. Cooked sausage, ham, or extra veggies all work.

No mini pepperoni. Slice full-size pepperoni into quarters to get those same little bites.

Pre-shredded cheese in a pinch. It will work if that is what you have, but freshly shredded mozzarella melts better and tastes less powdery.

Add a little heat. If you like a kick, a pinch of red pepper flakes over the top is a good starting point.

How to Store Leftovers

Store any leftovers in an airtight container in the refrigerator for up to 3 days. These are best served fresh, since zucchini softens the longer it sits, so I make them when I know we will eat them that night. I do not recommend freezing these, because they do not freeze well.

Pizza Zucchini Boats topped with melted mozzarella, mini pepperoni, and fresh basil on a parchment-lined baking sheet.

Frequently Asked Questions

Should I use large or medium zucchini?

Large is what I use. I tested both side by side, and the large zucchini held up just as well as the medium, gave a bigger portion, and tasted the same. Medium work too if that is what you have, just use a little less sauce and fewer pepperoni so you do not overfill them.

How do I keep zucchini pizza boats from getting watery?

The two moves that matter are a short 5-minute prebake and blotting the zucchini dry before and after. Zucchini holds a lot of water, and pulling that moisture out before the toppings go on keeps the boats from turning soggy.

Do I have to scoop out the zucchini?

Yes. Scooping out the center creates the boat shape that holds the sauce, cheese, and pepperoni. A spoon or a melon baller works, but be careful not to pierce through the bottom.

Can I make these zucchini pizza boats ahead of time?

They are best served fresh, right out of the oven. If you have leftovers, store them in an airtight container in the fridge for up to 3 days.

Are zucchini pizza boats low carb?

They are lighter than a traditional dough pizza since the zucchini stands in for the crust. You still get the same cheesy, saucy pizza flavors you are after.

What toppings can I use?

Any of your pizza favorites. Cooked sausage, ham, mushrooms, peppers, or onions are all good options in place of or alongside the pepperoni.

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5 from 3 votes
pizza zucchini boats on top of parchment paper

Pizza Zucchini Boats

Serves — 8
These zucchini pizza boats give you all the pizza flavors you love, made lighter with tender zucchini. I make them all summer when zucchini is everywhere.
Prep Time 10 minutes
Cook Time 25 minutes
Total Time 35 minutes

Ingredients
 

  • 4 large zucchini squash
  • tablespoons extra virgin olive oil
  • 1 teaspoon kosher salt
  • 1 teaspoon fresh cracked black pepper
  • 1 teaspoon Italian seasonings
  • ¾ cup pizza sauce
  • 2 cups freshly shredded mozzarella cheese
  • cup sliced mini pepperoni
  • fresh basil chopped, optional garnish
  • Parmesan cheese optional garnish

Instructions
 

  • Preheat the oven to 425°F. Line a baking sheet with parchment paper and set aside.
  • Slice the zucchini in half lengthwise but do not cut off the tops. Use either a spoon or a melon baller to scoop out the insides of the zucchini. (Be careful not to pierce through the zucchini) Place the sliced and scooped zucchini halves, cut side up, on the prepared baking sheet. Blot the inside of the zucchini with a paper towel.
    4 large zucchini squash
  • Use a pastry brush to brush each of the zucchini halves with the extra virgin olive oil.
    1½ tablespoons extra virgin olive oil
  • Sprinkle each halved zucchini with Italian seasoning, kosher salt and cracked black pepper. Bake for 5 minutes. Remove the zucchini from the oven. Pat dry with a paper towel.
    1 teaspoon kosher salt, 1 teaspoon fresh cracked black pepper, 1 teaspoon Italian seasonings
  • Spread 1½ tablespoons of pizza sauce down the center of each zucchini.
    ¾ cup pizza sauce
  • Sprinkle each zucchini half with ¼ cup freshly shredded mozzarella cheese over the pizza sauce.
    2 cups freshly shredded mozzarella cheese, ⅔ cup sliced mini pepperoni
  • Arrange 14-16 slices of mini pepperoni over the mozzarella cheese layer. Bake for 7-10 minutes or until the cheese is melted. Turn on the broiler and broil for another 2-3 minutes until the cheese is slightly charred. Allow the pizza boats to rest a few minutes before serving.
  • Garnish with fresh basil and parmesan cheese.
    fresh basil, Parmesan cheese

Jenn’s Notes

Storage:
These are best eaten the day they’re made, zucchini continues to soften the longer it sits, so I usually make them when I know they’ll be finished that night. If you do have leftovers, store them in an airtight container in the refrigerator for up to 3 days. Freezing isn’t recommended here; they just don’t hold up well.
Tips:
  • Keep the prebake to 5 minutes, not 10. A longer prebake sounds like it would help, but testing proved otherwise, 10 minutes left the zucchini mushy by the time it went through the filling, second bake, and broiler. Five minutes softens it just enough while keeping it sturdy enough to hold its shape.
  • Blot before the prebake and again right after. Zucchini releases a surprising amount of water as it bakes. That second round of blotting right when it comes out of the oven is what separates a firm, sturdy boat from a watery one.
  • Season the zucchini itself, not just the toppings. Salt, pepper, and Italian seasoning go directly on the zucchini before anything else. If you rely on the toppings alone to carry the flavor, you’ll taste the difference.
  • Finish under the broiler. Baking melts the cheese, but a couple of minutes under the broiler is what gives you those browned, bubbly spots that make these taste like they came from a real pizzeria. Stay close, it goes from perfectly golden to overdone in a matter of seconds.
  • Cut even halves. Try to slice your zucchini into halves that are similar in size and thickness so everything finishes cooking at the same time.

Nutrition Info

Calories: 178kcal | Carbohydrates: 5g | Protein: 10g | Fat: 14g | Saturated Fat: 6g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 6g | Trans Fat: 0.2g | Cholesterol: 31mg | Sodium: 732mg | Potassium: 378mg | Fiber: 1g | Sugar: 4g | Vitamin A: 490IU | Vitamin C: 19mg | Calcium: 167mg | Iron: 1mg

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Comments

  1. Haven’t tired it yet. Wanted to know if they could be done in a fryer? Love the idea.

    1. You probably can make these in the air fryer, but I haven’t tested them myself, so I can’t guarantee the results. If you’d like to try it, I’d start at 375°F for about 8 to 12 minutes, checking until the zucchini is tender and the cheese is melted and bubbly. Keep in mind that air fryer cooking times can vary by model, so you may need to adjust a bit. Let us know how they turn out if you try it! 😊